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Core Facilities

High-Throughput Polymorphism Detection

Pricing

1) SNP Analysis using Taqman

SNP start up fees:

     ◦   Fewer than 700 samples and assay not in stock (DF/HCC): $224
     ◦   Fewer than 700 samples and assay not in stock: $250

     ◦   700-2000 samples and assay is in stock (DF/HCC): $359
     ◦   700-2000 samples and assay is in stock: $400

     ◦  2000 samples or more and assay not in stock (DF/HCC): $812

     ◦  2000 samples or more and assay not in stock: $905


Genotyping:
      ◦  Taqman assay (DF/HCC members): $0.57 per sample
      ◦  Taqman assay: $0.64 per sample

Sample Verification:

      ◦  Two SNP sample verification: $1.14 per sample

2) SNP Analysis using Taqman OpenArray Genotyping

The Taqman OpenArray platform allows users to run 16, 32 or 64 SNPs in parallel using Taqman reagents.

OpenArray Set-Up Fee (For all orders placed after 1st October 2012):

  • $197 DF/HCC members

OpenArray - per SNP per sample cost:

# Samples

16

32

64

<350

0.51

0.31

0.30

<500

0.40

0.25

0.22

<1500

0.24

0.21

0.16

<2500

0.20

0.21

0.17

<3500

0.19

0.16

0.14

<4500

0.19

0.15

0.15

<5000

0.19

0.16

0.15

The per genotype cost varies with the number of samples and the number of SNPs.  Please contact Hardeep Ranu for exact pricing information.

617 432 4469 / hranu@hsph.harvard.edu

3) DNA Extraction, plating, and whole genome amplification (all prices quoted are for DF/HCC members)    

    ◦    Sample plating: $0.92 per sample   

    ◦    Pico green DNA quantification: $1.32 per sample

    ◦    Full DNA extraction or Whole genome amplification: $12.20 per sample

    ◦    Sample standardization (pico, dilution, tracking, submission: $2.61 per sample

    ◦    GWAS (Genome Wide Association Study) sample preparation (steps may include pico, dry-down to concentrate, resuspension, re-pico, track and submit): $4.36

Please contact Pati Soule for more information:

617 432 6101 / psoule@hsph.harvard.edu

4) SNP analysis using Illumina

DF/HCC members receive member rates for these services.

** NEWS: We now offer sequencing using the Illumina MiSeq v2 sequencer, please contact us for more information **

 Please visit our website (http://pcpgm.partners.org) to find more information about out Next-Gen Sequencing, Genotyping and Microarray Services.

Please contact Ashley Blau for quotes and information on the Illumina platform.

617-768-8557 / ablau@partners.org