Cheng Li, PhD

Publications

Amin SB, Shah PK, Yan A, Adamia S, Minvielle S, Avet-Loiseau H, Munshi NC, Li C.The dChip survival analysis module for microarray data.BMC Bioinformatics. 2011;12:72.
21388547
Cao Q, Zhou M, Wang X, Meyer CA, Zhang Y, Chen Z, Li C, Liu XS.CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data.Nucleic Acids Res. 2011 Jan;39(Database issue):D968-74.
20972221
Parkin B, Erba H, Ouillette P, Roulston D, Purkayastha A, Karp J, Talpaz M, Kujawski L, Shakhan S, Li C, Shedden K, Malek SN.Acquired genomic copy number aberrations and survival in adult acute myelogenous leukemia.Blood. 2010 Dec 2;116(23):4958-67.
20729466
Parkin B, Ouillette P, Wang Y, Liu Y, Wright W, Roulston D, Purkayastha A, Dressel A, Karp JE, Bockenstedt P, Al-Zoubi A, Talpaz M, Kujawski L, Liu Y, Shedden K, Shakhan S, Li C, Erba H, Malek SN.NF1 INACTIVATION IN ADULT ACUTE MYELOGENOUS LEUKEMIA.Clin C
20505189
Aghajan M, Jonai N, Flick K, Fu F, Luo M, Cai X, Ouni I, Pierce N, Tang X, Lomenick B, Damoiseaux R, Hao R, Del Moral PM, Verma R, Li Y, Li C, Houk KN, Jung ME, Zheng N, Huang L, Deshaies RJ, Kaiser P, Huang J.Chemical genetics screen for enhancers of rap
20581845
Heinrichs S, Li C, Look AT.SNP array analysis in hematological malignancies: avoiding false discoveries.Blood. 2010 May 27;115(21):4157-61. Review.
20304806
Ebenstein DM,Coughlin D,Chapman J,Li C,Pruitt LA.Nanomechanical properties of calcification, fibrous tissue, and hematoma from atherosclerotic plaques.J Biomed Mater Res A. 2009 Dec 15;91(4):1028-37.
19107789
Li J, Milbury CA, Li C, Makrigiorgos GM.Two-round coamplification at lower denaturation temperature-PCR (COLD-PCR)-based sanger sequencing identifies a novel spectrum of low-level mutations in lung adenocarcinoma.Hum Mutat. 2009 Nov;30(11):1583-90.
19760750
Avet-Loiseau H, Li C, Magrangeas F, Gouraud W, Charbonnel C, Harousseau JL, Attal M, Marit G, Mathiot C, Facon T, Moreau P, Anderson KC, Campion L, Munshi NC, Minvielle S.Prognostic significance of copy-number alterations in multiple myeloma.J Clin Oncol.
19687334
Heinrichs S, Kulkarni RV, Bueso-Ramos CE, Levine RL, Loh ML, Li C, Neuberg D, Kornblau SM, Issa JP, Gilliland DG, Garcia-Manero G, Kantarjian HM, Estey EH, Look AT.Accurate detection of uniparental disomy and microdeletions by SNP array analysis in myelod
19387468
Li C,Kim SW,Rai D,Bolla AR,Adhvaryu S,Kinney MC,Robetorye RS,Aguiar RC.Copy number abnormalities, MYC activity and the genetic fingerprint of normal B-cells mechanistically define the microRNA profile of DLBCL.Blood. 2009 Jun 25;113(26):6681-90.
19278952
Volchenboum SL,Li C,Li S,Attiyeh EF,Reynolds CP,Maris JM,Look AT,George RE.Comparison of primary neuroblastoma tumors and derivative early-passage cell lines using genome-wide single nucleotide polymorphism array analysis.Cancer Res. 2009 May 15;69(10):41
19435921
Smith PA,Crampton JR,Pritchard S,Li C.Pneumothorax as a presenting feature of granulomatous disease of the lung in a patient with Crohn's disease.Eur J Gastroenterol Hepatol. 2009 Feb;21(2):237-40.
19212215
Luo B,Cheung HW,Subramanian A,Sharifnia T,Okamoto M,Yang X,Hinkle G,Boehm JS,Beroukhim R,Weir BA,Mermel C,Barbie DA,Awad T,Zhou X,Nguyen T,Piqani B,Li C,Golub TR,Meyerson M,Hacohen N,Hahn WC,Lander ES,Sabatini DM,Root DE.Highly parallel identification of
19091943
Shammas MA,Shmookler Reis RJ,Koley H,Batchu RB,Li C,Munshi NC.Dysfunctional homologous recombination mediates genomic instability and progression in myeloma.Blood. 2009 Mar 5;113(10):2290-7.
19050310
Li C,Liu T,Broske L,Brisson JM,Uss AS,Njoroge FG,Morrison RA,Cheng KC.Permeability evaluation of peptidic HCV protease inhibitors in Caco-2 cells-correlation with in vivo absorption predicted in humans.Biochem Pharmacol. 2008 Dec 15;76(12):1757-64.
18835257
Loerch PM,Lu T,Dakin KA,Vann JM,Isaacs A,Geula C,Wang J,Pan Y,Gabuzda DH,Li C,Prolla TA,Yankner BA.Evolution of the aging brain transcriptome and synaptic regulation.PLoS ONE. 2008;3(10):e3329.
18830410
Li C.Automating dChip: toward reproducible sharing of microarray data analysis.BMC Bioinformatics. 2008 May 8;9(1):231.
18466620
Li C, Beroukhim R, Weir BA, Winckler W, Garraway LA, Sellers WR, Meyerson M.Major copy proportion analysis of tumor samples using SNP arrays.BMC Bioinformatics. 2008;9:204.
18426588
Li C, Nair L, Liu T, Li F, Pichardo J, Agrawal S, Chase R, Tong X, Uss AS, Bogen S, Njoroge FG, Morrison RA, Cheng KC.Correlation between PAMPA permeability and cellular activities of hepatitis C virus protease inhibitors.Biochem Pharmacol. 2008 Mar 1;75(
18164692
Sun QZ, Li C, Qu G, et al.[Treatment experience of tracheal stenosis from endotracheal granuloma forming after tracheostomy].Zhonghua Er Bi Yan Hou Tou Jing Wai Ke Za Zhi. 2007 Sep;42(9):678.
18051567
Li C, Liu T, Cui X, Uss AS, Cheng KC.Development of in vitro pharmacokinetic screens using Caco-2, human hepatocyte, and Caco-2/human hepatocyte hybrid systems for the prediction of oral bioavailability in humans.J Biomol Screen. 2007 Dec;12(8):1084-91.
17989424
Ye B, Yang JL, Chen LJ, Wu XX, Yang HS, Zhao JM, Yuan ZP, Li J, Wen YJ, Mao YQ, Lei S, Kan B, Fan LY, Yao WX, Wang R, Wang GQ, Du XB, Liu HY, Wu HB, Xu JR, Li HX, Zhang W, Zhao X, Wei YQ, Cheng L.Induction of apoptosis by phenylisocyanate derivative of qu
17893517
Li C, Hossieny P, Wu BJ, Qawasmeh A, Beck K, Stocker R.Pharmacologic induction of heme oxygenase-1.Antioxid Redox Signal. 2007 Dec;9(12):2227-39. Review.
17822367
Li C, Satyanarayanajois SD.Structure-function studies of peptides for cell adhesion inhibition: identification of key residues by alanine mutation and peptide-truncation approach.Peptides. 2007 Aug;28(8):1498-508.
17689835
Liu J, Li C, Ke S, Satyanarayanajois SD.Structure-based rational design of beta-hairpin peptides from discontinuous epitopes of cluster of differentiation 2 (CD2) protein to modulate cell adhesion interaction.J Med Chem. 2007 Aug 23;50(17):4038-47.
17658775
Xue FS, Zhang GH, Li XY, Sun HT, Li P, Li CW, Liu KP.Comparison of hemodynamic responses to orotracheal intubation with the GlideScope videolaryngoscope and the Macintosh direct laryngoscope.J Clin Anesth. 2007 Jun;19(4):245-50.
17572317
Johnson WE, Rabinovic A, Li C.Adjusting batch effects in microarray expression data using Empirical Bayes methods.Biostatistics. 2007 Jan;8(1):118-27.
16632515
Beroukhim R, Lin M, Park Y, Hao K, Zhao X, Garraway LA, Fox EA, Hochberg EP, Mellinghoff IK, Hofer MD, Descazeaud A, Rubin MA, Meyerson M, Wong WH, Sellers WR, Li C.Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide S
16699594
Garraway LA, Widlund HR, Rubin MA, Getz G, Berger AJ, Ramaswamy S, Beroukhim R, Milner DA, Granter SR, Du J, Lee C, Wagner SN, Li C, Golub TR, Rimm DL, Meyerson ML, Fisher DE, Sellers WR.Integrative genomic analyses identify MITF as a lineage survival onc
16001072

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DF/HCC Directory Login Update Member Profile Change Account Settings Applying for Membership Benefits Requirements Responsibilities	Cheng Li, PhD Publications Amin SB, Shah PK, Yan A, Adamia S, Minvielle S, Avet-Loiseau H, Munshi NC, Li C.The dChip survival analysis module for microarray data.BMC Bioinformatics. 2011;12:72. 21388547 Cao Q, Zhou M, Wang X, Meyer CA, Zhang Y, Chen Z, Li C, Liu XS.CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data.Nucleic Acids Res. 2011 Jan;39(Database issue):D968-74. 20972221 Parkin B, Erba H, Ouillette P, Roulston D, Purkayastha A, Karp J, Talpaz M, Kujawski L, Shakhan S, Li C, Shedden K, Malek SN.Acquired genomic copy number aberrations and survival in adult acute myelogenous leukemia.Blood. 2010 Dec 2;116(23):4958-67. 20729466 Parkin B, Ouillette P, Wang Y, Liu Y, Wright W, Roulston D, Purkayastha A, Dressel A, Karp JE, Bockenstedt P, Al-Zoubi A, Talpaz M, Kujawski L, Liu Y, Shedden K, Shakhan S, Li C, Erba H, Malek SN.NF1 INACTIVATION IN ADULT ACUTE MYELOGENOUS LEUKEMIA.Clin C 20505189 Aghajan M, Jonai N, Flick K, Fu F, Luo M, Cai X, Ouni I, Pierce N, Tang X, Lomenick B, Damoiseaux R, Hao R, Del Moral PM, Verma R, Li Y, Li C, Houk KN, Jung ME, Zheng N, Huang L, Deshaies RJ, Kaiser P, Huang J.Chemical genetics screen for enhancers of rap 20581845 Heinrichs S, Li C, Look AT.SNP array analysis in hematological malignancies: avoiding false discoveries.Blood. 2010 May 27;115(21):4157-61. Review. 20304806 Ebenstein DM,Coughlin D,Chapman J,Li C,Pruitt LA.Nanomechanical properties of calcification, fibrous tissue, and hematoma from atherosclerotic plaques.J Biomed Mater Res A. 2009 Dec 15;91(4):1028-37. 19107789 Li J, Milbury CA, Li C, Makrigiorgos GM.Two-round coamplification at lower denaturation temperature-PCR (COLD-PCR)-based sanger sequencing identifies a novel spectrum of low-level mutations in lung adenocarcinoma.Hum Mutat. 2009 Nov;30(11):1583-90. 19760750 Avet-Loiseau H, Li C, Magrangeas F, Gouraud W, Charbonnel C, Harousseau JL, Attal M, Marit G, Mathiot C, Facon T, Moreau P, Anderson KC, Campion L, Munshi NC, Minvielle S.Prognostic significance of copy-number alterations in multiple myeloma.J Clin Oncol. 19687334 Heinrichs S, Kulkarni RV, Bueso-Ramos CE, Levine RL, Loh ML, Li C, Neuberg D, Kornblau SM, Issa JP, Gilliland DG, Garcia-Manero G, Kantarjian HM, Estey EH, Look AT.Accurate detection of uniparental disomy and microdeletions by SNP array analysis in myelod 19387468 Li C,Kim SW,Rai D,Bolla AR,Adhvaryu S,Kinney MC,Robetorye RS,Aguiar RC.Copy number abnormalities, MYC activity and the genetic fingerprint of normal B-cells mechanistically define the microRNA profile of DLBCL.Blood. 2009 Jun 25;113(26):6681-90. 19278952 Volchenboum SL,Li C,Li S,Attiyeh EF,Reynolds CP,Maris JM,Look AT,George RE.Comparison of primary neuroblastoma tumors and derivative early-passage cell lines using genome-wide single nucleotide polymorphism array analysis.Cancer Res. 2009 May 15;69(10):41 19435921 Smith PA,Crampton JR,Pritchard S,Li C.Pneumothorax as a presenting feature of granulomatous disease of the lung in a patient with Crohn's disease.Eur J Gastroenterol Hepatol. 2009 Feb;21(2):237-40. 19212215 Luo B,Cheung HW,Subramanian A,Sharifnia T,Okamoto M,Yang X,Hinkle G,Boehm JS,Beroukhim R,Weir BA,Mermel C,Barbie DA,Awad T,Zhou X,Nguyen T,Piqani B,Li C,Golub TR,Meyerson M,Hacohen N,Hahn WC,Lander ES,Sabatini DM,Root DE.Highly parallel identification of 19091943 Shammas MA,Shmookler Reis RJ,Koley H,Batchu RB,Li C,Munshi NC.Dysfunctional homologous recombination mediates genomic instability and progression in myeloma.Blood. 2009 Mar 5;113(10):2290-7. 19050310 Li C,Liu T,Broske L,Brisson JM,Uss AS,Njoroge FG,Morrison RA,Cheng KC.Permeability evaluation of peptidic HCV protease inhibitors in Caco-2 cells-correlation with in vivo absorption predicted in humans.Biochem Pharmacol. 2008 Dec 15;76(12):1757-64. 18835257 Loerch PM,Lu T,Dakin KA,Vann JM,Isaacs A,Geula C,Wang J,Pan Y,Gabuzda DH,Li C,Prolla TA,Yankner BA.Evolution of the aging brain transcriptome and synaptic regulation.PLoS ONE. 2008;3(10):e3329. 18830410 Li C.Automating dChip: toward reproducible sharing of microarray data analysis.BMC Bioinformatics. 2008 May 8;9(1):231. 18466620 Li C, Beroukhim R, Weir BA, Winckler W, Garraway LA, Sellers WR, Meyerson M.Major copy proportion analysis of tumor samples using SNP arrays.BMC Bioinformatics. 2008;9:204. 18426588 Li C, Nair L, Liu T, Li F, Pichardo J, Agrawal S, Chase R, Tong X, Uss AS, Bogen S, Njoroge FG, Morrison RA, Cheng KC.Correlation between PAMPA permeability and cellular activities of hepatitis C virus protease inhibitors.Biochem Pharmacol. 2008 Mar 1;75( 18164692 Sun QZ, Li C, Qu G, et al.[Treatment experience of tracheal stenosis from endotracheal granuloma forming after tracheostomy].Zhonghua Er Bi Yan Hou Tou Jing Wai Ke Za Zhi. 2007 Sep;42(9):678. 18051567 Li C, Liu T, Cui X, Uss AS, Cheng KC.Development of in vitro pharmacokinetic screens using Caco-2, human hepatocyte, and Caco-2/human hepatocyte hybrid systems for the prediction of oral bioavailability in humans.J Biomol Screen. 2007 Dec;12(8):1084-91. 17989424 Ye B, Yang JL, Chen LJ, Wu XX, Yang HS, Zhao JM, Yuan ZP, Li J, Wen YJ, Mao YQ, Lei S, Kan B, Fan LY, Yao WX, Wang R, Wang GQ, Du XB, Liu HY, Wu HB, Xu JR, Li HX, Zhang W, Zhao X, Wei YQ, Cheng L.Induction of apoptosis by phenylisocyanate derivative of qu 17893517 Li C, Hossieny P, Wu BJ, Qawasmeh A, Beck K, Stocker R.Pharmacologic induction of heme oxygenase-1.Antioxid Redox Signal. 2007 Dec;9(12):2227-39. Review. 17822367 Li C, Satyanarayanajois SD.Structure-function studies of peptides for cell adhesion inhibition: identification of key residues by alanine mutation and peptide-truncation approach.Peptides. 2007 Aug;28(8):1498-508. 17689835 Liu J, Li C, Ke S, Satyanarayanajois SD.Structure-based rational design of beta-hairpin peptides from discontinuous epitopes of cluster of differentiation 2 (CD2) protein to modulate cell adhesion interaction.J Med Chem. 2007 Aug 23;50(17):4038-47. 17658775 Xue FS, Zhang GH, Li XY, Sun HT, Li P, Li CW, Liu KP.Comparison of hemodynamic responses to orotracheal intubation with the GlideScope videolaryngoscope and the Macintosh direct laryngoscope.J Clin Anesth. 2007 Jun;19(4):245-50. 17572317 Johnson WE, Rabinovic A, Li C.Adjusting batch effects in microarray expression data using Empirical Bayes methods.Biostatistics. 2007 Jan;8(1):118-27. 16632515 Beroukhim R, Lin M, Park Y, Hao K, Zhao X, Garraway LA, Fox EA, Hochberg EP, Mellinghoff IK, Hofer MD, Descazeaud A, Rubin MA, Meyerson M, Wong WH, Sellers WR, Li C.Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide S 16699594 Garraway LA, Widlund HR, Rubin MA, Getz G, Berger AJ, Ramaswamy S, Beroukhim R, Milner DA, Granter SR, Du J, Lee C, Wagner SN, Li C, Golub TR, Rimm DL, Meyerson ML, Fisher DE, Sellers WR.Integrative genomic analyses identify MITF as a lineage survival onc 16001072
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