Giovanni Parmigiani, PhD

Publications

Parsons DW, Li M, Zhang X, Jones S, Leary RJ, Lin JC, Boca SM, Carter H, Samayoa J, Bettegowda C, Gallia GL, Jallo GI, Binder ZA, Nikolsky Y, Hartigan J, Smith DR, Gerhard DS, Fults DW, VandenBerg S, Berger MS, Marie SK, Shinjo SM, Clara C, Phillips PC, M
21163964
Ho YY, Parmigiani G, Louis TA, Cope LM.Modeling Liquid Association.Biometrics. 2010 Jun 1.
20528865
Boca SM, Kinzler K, Velculescu VE, Vogelstein B, Parmigiani G.Patient-oriented gene set analysis for cancer mutation data.Genome Biol. 2010 Nov 23;11(11):R112.
21092299
Scharpf RB, Iacobuzio-Donahue CA, Cope L, Ruczinski I, Garrett-Mayer E, Lakkur S, Campagna D, Parmigiani G.Cross-platform Comparison of Two Pancreatic Cancer Phenotypes.Cancer Inform. 2010;9:257-64.
21082040
Fertig EJ, Ding J, Favorov AV, Parmigiani G, Ochs MF.CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data.Bioinformatics. 2010 Nov 1;26(21):2792-3.
20810601
Wang W, Niendorf KB, Patel D, Blackford A, Marroni F, Sober AJ, Parmigiani G, Tsao H.Estimating CDKN2A carrier probability and personalizing cancer risk assessments in hereditary melanoma using MelaPRO.Cancer Res. 2010 Jan 15;70(2):552-9.
20068151
Lin X, Afsari B, Marchionni L, Cope L, Parmigiani G, Naiman D, Geman D.The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations.BMC Bioinformatics. 2009;10:256.
19695104
Guda K, Moinova H, He J, Jamison O, Ravi L, Natale L, Lutterbaugh J, Lawrence E, Lewis S, Willson JK, Lowe JB, Wiesner GL, Parmigiani G, Barnholtz-Sloan J, Dawson DW, Velculescu VE, Kinzler KW, Papadopoulos N, Vogelstein B, Willis J, Gerken TA, Markowitz
19617566
He X, Marchionni L, Hansel DE, Yu W, Sood A, Yang J, Parmigiani G, Matsui W, Berman DM.Differentiation of a highly tumorigenic basal cell compartment in urothelial carcinoma.Stem Cells. 2009 Jul;27(7):1487-95.
19544456
Blackford A, Serrano OK, Wolfgang CL, Parmigiani G, Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Eshleman JR, Goggins M, Jaffee EM, Iacobuzio-Donahue CA, Maitra A, Cameron JL, Olino K, Schulick R, Winter J, Herman JM, Laheru D, Klein AP, Vogelstein B,
19584151
Parmigiani G, Boca S, Lin J, Kinzler KW, Velculescu V, Vogelstein B.Design and analysis issues in genome-wide somatic mutation studies of cancer.Genomics. 2009 Jan;93(1):17-21. Review.
18692126
Tai YC, Chen S, Parmigiani G, Klein AP.Incorporating tumor immunohistochemical markers in BRCA1 and BRCA2 carrier prediction.Breast Cancer Res. 2008 Mar 20;10(2):401.
18466632
Marchionni L, Wilson RF, Wolff AC, Marinopoulos S, Parmigiani G, Bass EB, Goodman SN.Systematic review: gene expression profiling assays in early-stage breast cancer.Ann Intern Med. 2008 Mar 4;148(5):358-69. Review.
18252678
Tai YC, Domchek S, Parmigiani G, Chen S.Breast cancer risk among male BRCA1 and BRCA2 mutation carriers.Journal of the National Cancer Institute. 2007 Dec 5;99(23):1811-4.
18042939
Wood LD, Parsons DW, Jones S, Lin J, Sjoblom T, Leary RJ, Shen D, Boca SM, Barber T, Ptak J, Silliman N, Szabo S, Dezso Z, Ustyanksky V, Nikolskaya T, Nikolsky Y, Karchin R, Wilson PA, Kaminker JS, Zhang Z, Croshaw R, Willis J, Dawson D, Shipitsin M, Will
17932254
Parmigiani G, Chen S, Iversen ES Jr, Friebel TM, Finkelstein DM, Anton-Culver H, Ziogas A, Weber BL, Eisen A, Malone KE, Daling JR, Hsu L, Ostrander EA, Peterson LE, Schildkraut JM, Isaacs C, Corio C, Leondaridis L, Tomlinson G, Amos CI, Strong LC, Berry
17909205
Lin J, Gan CM, Zhang X, Jones S, Sjöblom T, Wood LD, Parsons DW, Papadopoulos N, Kinzler KW, Vogelstein B, Parmigiani G, Velculescu VE.A multidimensional analysis of genes mutated in breast and colorectal cancers.Genome Res. 2007 Sep;17(9):1304-18.
17693572
Chen S, Parmigiani G.Meta-analysis of BRCA1 and BRCA2 penetrance.J Clin Oncol. 2007 Apr 10;25(11):1329-33.
17416853
Wang W, Chen S, Brune KA, Hruban RH, Parmigiani G, Klein AP.PancPRO: risk assessment for individuals with a family history of pancreatic cancer.J Clin Oncol. 2007 Apr 10;25(11):1417-22.
17416862
Sjöblom T, Jones S, Wood LD, Parsons DW, Lin J, Barber TD, Mandelker D, Leary RJ, Ptak J, Silliman N, Szabo S, Buckhaults P, Farrell C, Meeh P, Markowitz SD, Willis J, Dawson D, Willson JK, Gazdar AF, Hartigan J, Wu L, Liu C, Parmigiani G, Park BH, Bachm
16959974
Chen S, Wang W, Lee S, Nafa K, Lee J, Romans K, Watson P, Gruber SB, Euhus D, Kinzler KW, Jass J, Gallinger S, Lindor NM, Casey G, Ellis N, Giardiello FM, Offit K, Parmigiani G, .Prediction of germline mutations and cancer risk in the Lynch syndrome.JAMA
17003396

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DF/HCC Directory Login Update Member Profile Change Account Settings Applying for Membership Benefits Requirements Responsibilities	Giovanni Parmigiani, PhD Publications Parsons DW, Li M, Zhang X, Jones S, Leary RJ, Lin JC, Boca SM, Carter H, Samayoa J, Bettegowda C, Gallia GL, Jallo GI, Binder ZA, Nikolsky Y, Hartigan J, Smith DR, Gerhard DS, Fults DW, VandenBerg S, Berger MS, Marie SK, Shinjo SM, Clara C, Phillips PC, M 21163964 Ho YY, Parmigiani G, Louis TA, Cope LM.Modeling Liquid Association.Biometrics. 2010 Jun 1. 20528865 Boca SM, Kinzler K, Velculescu VE, Vogelstein B, Parmigiani G.Patient-oriented gene set analysis for cancer mutation data.Genome Biol. 2010 Nov 23;11(11):R112. 21092299 Scharpf RB, Iacobuzio-Donahue CA, Cope L, Ruczinski I, Garrett-Mayer E, Lakkur S, Campagna D, Parmigiani G.Cross-platform Comparison of Two Pancreatic Cancer Phenotypes.Cancer Inform. 2010;9:257-64. 21082040 Fertig EJ, Ding J, Favorov AV, Parmigiani G, Ochs MF.CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data.Bioinformatics. 2010 Nov 1;26(21):2792-3. 20810601 Wang W, Niendorf KB, Patel D, Blackford A, Marroni F, Sober AJ, Parmigiani G, Tsao H.Estimating CDKN2A carrier probability and personalizing cancer risk assessments in hereditary melanoma using MelaPRO.Cancer Res. 2010 Jan 15;70(2):552-9. 20068151 Lin X, Afsari B, Marchionni L, Cope L, Parmigiani G, Naiman D, Geman D.The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations.BMC Bioinformatics. 2009;10:256. 19695104 Guda K, Moinova H, He J, Jamison O, Ravi L, Natale L, Lutterbaugh J, Lawrence E, Lewis S, Willson JK, Lowe JB, Wiesner GL, Parmigiani G, Barnholtz-Sloan J, Dawson DW, Velculescu VE, Kinzler KW, Papadopoulos N, Vogelstein B, Willis J, Gerken TA, Markowitz 19617566 He X, Marchionni L, Hansel DE, Yu W, Sood A, Yang J, Parmigiani G, Matsui W, Berman DM.Differentiation of a highly tumorigenic basal cell compartment in urothelial carcinoma.Stem Cells. 2009 Jul;27(7):1487-95. 19544456 Blackford A, Serrano OK, Wolfgang CL, Parmigiani G, Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Eshleman JR, Goggins M, Jaffee EM, Iacobuzio-Donahue CA, Maitra A, Cameron JL, Olino K, Schulick R, Winter J, Herman JM, Laheru D, Klein AP, Vogelstein B, 19584151 Parmigiani G, Boca S, Lin J, Kinzler KW, Velculescu V, Vogelstein B.Design and analysis issues in genome-wide somatic mutation studies of cancer.Genomics. 2009 Jan;93(1):17-21. Review. 18692126 Tai YC, Chen S, Parmigiani G, Klein AP.Incorporating tumor immunohistochemical markers in BRCA1 and BRCA2 carrier prediction.Breast Cancer Res. 2008 Mar 20;10(2):401. 18466632 Marchionni L, Wilson RF, Wolff AC, Marinopoulos S, Parmigiani G, Bass EB, Goodman SN.Systematic review: gene expression profiling assays in early-stage breast cancer.Ann Intern Med. 2008 Mar 4;148(5):358-69. Review. 18252678 Tai YC, Domchek S, Parmigiani G, Chen S.Breast cancer risk among male BRCA1 and BRCA2 mutation carriers.Journal of the National Cancer Institute. 2007 Dec 5;99(23):1811-4. 18042939 Wood LD, Parsons DW, Jones S, Lin J, Sjoblom T, Leary RJ, Shen D, Boca SM, Barber T, Ptak J, Silliman N, Szabo S, Dezso Z, Ustyanksky V, Nikolskaya T, Nikolsky Y, Karchin R, Wilson PA, Kaminker JS, Zhang Z, Croshaw R, Willis J, Dawson D, Shipitsin M, Will 17932254 Parmigiani G, Chen S, Iversen ES Jr, Friebel TM, Finkelstein DM, Anton-Culver H, Ziogas A, Weber BL, Eisen A, Malone KE, Daling JR, Hsu L, Ostrander EA, Peterson LE, Schildkraut JM, Isaacs C, Corio C, Leondaridis L, Tomlinson G, Amos CI, Strong LC, Berry 17909205 Lin J, Gan CM, Zhang X, Jones S, Sjöblom T, Wood LD, Parsons DW, Papadopoulos N, Kinzler KW, Vogelstein B, Parmigiani G, Velculescu VE.A multidimensional analysis of genes mutated in breast and colorectal cancers.Genome Res. 2007 Sep;17(9):1304-18. 17693572 Chen S, Parmigiani G.Meta-analysis of BRCA1 and BRCA2 penetrance.J Clin Oncol. 2007 Apr 10;25(11):1329-33. 17416853 Wang W, Chen S, Brune KA, Hruban RH, Parmigiani G, Klein AP.PancPRO: risk assessment for individuals with a family history of pancreatic cancer.J Clin Oncol. 2007 Apr 10;25(11):1417-22. 17416862 Sjöblom T, Jones S, Wood LD, Parsons DW, Lin J, Barber TD, Mandelker D, Leary RJ, Ptak J, Silliman N, Szabo S, Buckhaults P, Farrell C, Meeh P, Markowitz SD, Willis J, Dawson D, Willson JK, Gazdar AF, Hartigan J, Wu L, Liu C, Parmigiani G, Park BH, Bachm 16959974 Chen S, Wang W, Lee S, Nafa K, Lee J, Romans K, Watson P, Gruber SB, Euhus D, Kinzler KW, Jass J, Gallinger S, Lindor NM, Casey G, Ellis N, Giardiello FM, Offit K, Parmigiani G, .Prediction of germline mutations and cancer risk in the Lynch syndrome.JAMA 17003396
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