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Peter J. Tonellato, PhD

Publications

  • Przybytkowski E, Aguilar-Mahecha A, Nabavi S, Tonellato PJ, Basik M.Ultradense array CGH and discovery of micro-copy number alterations and gene fusions in the cancer genome.Methods Mol Biol. 2013;973:15-38.
    23412781
  • Wall DP, Tonellato PJ.The future of genomics in pathology.F1000 Med Rep. 2012;4:14.
    22802873
  • Chi CL, Fusaro VA, Patil P, Crawford MA, Content CF, Tonellato PJ.A simulation platform to examine heterogeneity influence on treatment.AMIA Summits Transl Sci Proc. 2012;2012:19-24.
    22779042
  • Wall DP, Pivovarov R, Tong M, Jung JY, Fusaro VA, DeLuca TF, Tonellato PJ.Genotator: a disease-agnostic tool for genetic annotation of disease.BMC Med Genomics. 2010;3:50.
    21034472
  • Wall DP, Kudtarkar P, Fusaro VA, Pivovarov R, Patil P, Tonellato PJ.Cloud computing for comparative genomics.BMC Bioinformatics. 2010;11:259.
    20482786
  • Kwitek AE, Jacob HJ, Baker JE, Dwinell MR, Forster HV, Greene AS, Kunert MP, Lombard JH, Mattson DL, Pritchard KA, Roman RJ, Tonellato PJ, Cowley AW.BN phenome: detailed characterization of the cardiovascular, renal, and pulmonary systems of the sequenced rat.Physiol Genomics. 2006 Apr 13;25(2):303-13.
    16478827
  • Twigger SN, Pasko D, Nie J, Shimoyama M, Bromberg S, Campbell D, Chen J, dela Cruz N, Fan C, Foote C, Harris G, Hickmann B, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nigam R, Petri V, Reilly D, Ruotti V, Schauberger E, Seiler K, Slyper R, Smith J, Wang W, Wu W, Zhao L, Zuniga-Meyer A, Tonellato PJ, Kwitek AE, Jacob HJ.Tools and strategies for physiological genomics: the Rat Genome Database.Physiol Genomics. 2005 Oct 17;23(2):246-56.
    16106031
  • Postlethwait J, Ruotti V, Carvan MJ, Tonellato PJ.Automated analysis of conserved syntenies for the zebrafish genome.Methods Cell Biol. 2004;77:255-71.
    15602916
  • Twigger SN, Nie J, Ruotti V, Yu J, Chen D, Li D, Mathis J, Narayanasamy V, Gopinath GR, Pasko D, Shimoyama M, De La Cruz N, Bromberg S, Kwitek AE, Jacob HJ, Tonellato PJ.Integrative genomics: in silico coupling of rat physiology and complex traits with mouse and human data.Genome Res. 2004 Apr;14(4):651-60.
    15060006
  • Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, Dugan-Rocha S, Miner G, Morgan M, Hawes A, Gill R, Celera , Holt RA, Adams MD, Amanatides PG, Baden-Tillson H, Barnstead M, Chin S, Evans CA, Ferriera S, Fosler C, Glodek A, Gu Z, Jennings D, Kraft CL, Nguyen T, Pfannkoch CM, Sitter C, Sutton GG, Venter JC, Woodage T, Smith D, Lee HM, Gustafson E, Cahill P, Kana A, Doucette-Stamm L, Weinstock K, Fechtel K, Weiss RB, Dunn DM, Green ED, Blakesley RW, Bouffard GG, De Jong PJ, Osoegawa K, Zhu B, Marra M, Schein J, Bosdet I, Fjell C, Jones S, Krzywinski M, Mathewson C, Siddiqui A, Wye N, McPherson J, Zhao S, Fraser CM, Shetty J, Shatsman S, Geer K, Chen Y, Abramzon S, Nierman WC, Havlak PH, Chen R, Durbin KJ, Egan A, Ren Y, Song XZ, Li B, Liu Y, Qin X, Cawley S, Worley KC, Cooney AJ, D'Souza LM, Martin K, Wu JQ, Gonzalez-Garay ML, Jackson AR, Kalafus KJ, McLeod MP, Milosavljevic A, Virk D, Volkov A, Wheeler DA, Zhang Z, Bailey JA, Eichler EE, Tuzun E, Birney E, Mongin E, Ureta-Vidal A, Woodwark C, Zdobnov E, Bork P, Suyama M, Torrents D, Alexandersson M, Trask BJ, Young JM, Huang H, Wang H, Xing H, Daniels S, Gietzen D, Schmidt J, Stevens K, Vitt U, Wingrove J, Camara F, Mar Albà M, Abril JF, Guigo R, Smit A, Dubchak I, Rubin EM, Couronne O, Poliakov A, Hübner N, Ganten D, Goesele C, Hummel O, Kreitler T, Lee YA, Monti J, Schulz H, Zimdahl H, Himmelbauer H, Lehrach H, Jacob HJ, Bromberg S, Gullings-Handley J, Jensen-Seaman MI, Kwitek AE, Lazar J, Pasko D, Tonellato PJ, Twigger S, Ponting CP, Duarte JM, Rice S, Goodstadt L, Beatson SA, Emes RD, Winter EE, Webber C, Brandt P, Nyakatura G, Adetobi M, Chiaromonte F, Elnitski L, Eswara P, Hardison RC, Hou M, Kolbe D, Makova K, Miller W, Nekrutenko A, Riemer C, Schwartz S, Taylor J, Yang S, Zhang Y, Lindpaintner K, Andrews TD, Caccamo M, Clamp M, Clarke L, Curwen V, Durbin R, Eyras E, Searle SM, Cooper GM, Batzoglou S, Brudno M, Sidow A, Stone EA, Venter JC, Payseur BA, Bourque G, López-Otín C, Puente XS, Chakrabarti K, Chatterji S, Dewey C, Pachter L, Bray N, Yap VB, Caspi A, Tesler G, Pevzner PA, Haussler D, Roskin KM, Baertsch R, Clawson H, Furey TS, Hinrichs AS, Karolchik D, Kent WJ, Rosenbloom KR, Trumbower H, Weirauch M, Cooper DN, Stenson PD, Ma B, Brent M, Arumugam M, Shteynberg D, Copley RR, Taylor MS, Riethman H, Mudunuri U, Peterson J, Guyer M, Felsenfeld A, Old S, Mockrin S, Collins F, .Genome sequence of the Brown Norway rat yields insights into mammalian evolution.Nature. 2004 Apr 1;428(6982):493-521.
    15057822
  • Tatay JW, Feng X, Sobczak N, Jiang H, Chen CF, Kirova R, Struble C, Wang NJ, Tonellato PJ.Multiple approaches to data-mining of proteomic data based on statistical and pattern classification methods.Proteomics. 2003 Sep;3(9):1704-9.
    12973729
  • Twigger S, Lu J, Shimoyama M, Chen D, Pasko D, Long H, Ginster J, Chen CF, Nigam R, Kwitek A, Eppig J, Maltais L, Maglott D, Schuler G, Jacob H, Tonellato PJ.Rat Genome Database (RGD): mapping disease onto the genome.Nucleic Acids Res. 2002 Jan 1;30(1):125-8.
    11752273