• Home
  • News
  • Calendar
  • About DF/HCC
  • Membership
  • Visitor Center

Rafael Irizarry, PhD

Publications

  • Liu R, Dai Z, Yeager M, Irizarry RA, Ritchie ME.KRLMM: an adaptive genotype calling method for common and low frequency variants.BMC Bioinformatics. 2014 May 23;15(1):158.
    24886250
  • Brebi P, Maldonado L, Noordhuis MG, Ili C, Leal P, Garcia P, Brait M, Ribas J, Michailidi C, Perez J, Soudry E, Tapia O, Guzman P, Muñoz S, Van Neste L, Van Criekinge W, Irizarry R, Sidransky D, Roa JC, Guerrero-Preston R.Genome-wide methylation profiling reveals Zinc finger protein 516 (ZNF516) and FK-506-binding protein 6 (FKBP6) promoters frequently methylated in cervical neoplasia, associated with HPV status and ethnicity in a Chilean population.Epigenetics. 2014 Feb 1;9(2):308-17.
    24241165
  • Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA.Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.Bioinformatics. 2014 Feb 27.
    24478339
  • Halper-Stromberg E, Steranka J, Burns KH, Sabunciyan S, Irizarry RA.Visualization and probability-based scoring of structural variants within repetitive sequences.Bioinformatics. 2014 Feb 21.
    24501098
  • Jaffe AE, Irizarry RA.Accounting for cellular heterogeneity is critical in epigenome-wide association studies.Genome Biol. 2014 Feb 4;15(2):R31.
    24495553
  • Frazee AC, Sabunciyan S, Hansen KD, Irizarry RA, Leek JT.Differential expression analysis of RNA-seq data at single-base resolution.Biostatistics. 2014 Jan 6.
    24398039
  • McCall MN, Jaffee HA, Zelisko SJ, Sinha N, Hooiveld G, Irizarry RA, Zilliox MJ.The Gene Expression Barcode 3.0: improved data processing and mining tools.Nucleic Acids Res. 2014 Jan;42(Database issue):D938-43.
    24271388
  • Montaño CM, Irizarry RA, Kaufmann WE, Talbot K, Gur RE, Feinberg AP, Taub MA.Measuring cell-type specific differential methylation in human brain tissue.Genome Biol. 2013 Aug 30;14(8):R94.
    24000956
  • Beuf KD, Schrijver JD, Thas O, Criekinge WV, Irizarry RA, Clement L.Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model.BMC Bioinformatics. 2012;13:303.
    23151247
  • Bravo HC, Pihur V, McCall M, Irizarry RA, Leek JT.Gene expression anti-profiles as a basis for accurate universal cancer signatures.BMC Bioinformatics. 2012;13:272.
    23088656
  • Hansen KD, Langmead B, Irizarry RA.BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions.Genome Biol. 2012 Oct 3;13(10):R83.
    23034175
  • Scharpf RB, Irizarry RA, Ritchie ME, Carvalho B, Ruczinski I.Using the R Package crlmm for Genotyping and Copy Number Estimation.J Stat Softw. 2011 May 1;40(12):1-32.
    22523482