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Ramy Arnaout, MD, PhD

Publications

  • Kaplinsky J, Li A, Sun A, Coffre M, Koralov SB, Arnaout R.Antibody repertoire deep sequencing reveals antigen-independent selection in maturing B cells.Proc Natl Acad Sci U S A. 2014 Jun 9.
    24927543
  • Theisen-Toupal J, Breu AC, Mattison ML, Arnaout R.Diagnostic yield of head computed tomography for the hospitalized medical patient with delirium.J Hosp Med. 2014 Apr 15.
    24733711
  • Mohammad F, Theisen-Toupal JC, Arnaout R.Advantages and limitations of anticipating laboratory test results from regression- and tree-based rules derived from electronic health-record data.PLoS ONE. 2014;9(4):e92199.
    24732572
  • Baron JM, Dighe AS, Arnaout R, Balis UJ, Black-Schaffer WS, Carter AB, Henricks WH, Higgins JM, Jackson BR, Kim J, Klepeis VE, Le LP, Louis DN, Mandelker D, Mermel CH, Michaelson JS, Nagarajan R, Platt ME, Quinn AM, Rao L, Shirts BH, Gilbertson JR.The 2013 symposium on pathology data integration and clinical decision support and the current state of field.J Pathol Inform. 2014;5:2.
    24672737
  • Zhi M, Ding EL, Theisen-Toupal J, Whelan J, Arnaout R.The landscape of inappropriate laboratory testing: a 15-year meta-analysis.PLoS ONE. 2013;8(11):e78962.
    24260139
  • Tapper EB, Rahni DO, Arnaout R, Lai M.The overuse of serum ceruloplasmin measurement.Am J Med. 2013 Oct;126(10):926.e1-5.
    23953876
  • Arnaout R.Economic modelling could aid brain map.Nature. 2013 May 23;497(7450):439.
    23698434
  • Arnaout R, Buck TP, Roulette P, Sukhatme VP.Predicting the cost and pace of pharmacogenomic advances: an evidence-based study.Clin Chem. 2013 Apr;59(4):649-57.
    23230323
  • Lakhani KR, Boudreau KJ, Loh PR, Backstrom L, Baldwin C, Lonstein E, Lydon M, MacCormack A, Arnaout RA, Guinan EC.Prize-based contests can provide solutions to computational biology problems.Nat Biotechnol. 2013 Feb;31(2):108-11.
    23392504
  • Arnaout R.Elementary, my dear Doctor Watson.Clin Chem. 2012 Jun;58(6):986-8.
    22522222
  • Arnaout R, Lee W, Cahill P, Honan T, Sparrow T, Weiand M, Nusbaum C, Rajewsky K, Koralov SB.High-resolution description of antibody heavy-chain repertoires in humans.PLoS ONE. 2011;6(8):e22365.
    21829618
  • Buck TP, Connor IM, Horowitz GL, Arnaout RA.CallWall: tracking resident calls to improve clinical utilization of pathology laboratories.Arch Pathol Lab Med. 2011 Jul;135(7):920-4.
    21732784
  • Boguski MS, Arnaout R, Hill C.Customized care 2020: how medical sequencing and network biology will enable personalized medicine.F1000 Biol Rep. 2009;1:73.
    20948615
  • Tsibris AM, Korber B, Arnaout R, Russ C, Lo CC, Leitner T, Gaschen B, Theiler J, Paredes R, Su Z, Hughes MD, Gulick RM, Greaves W, Coakley E, Flexner C, Nusbaum C, Kuritzkes DR.Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo.PLoS ONE. 2009;4(5):e5683.
    19479085
  • Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, Rubio ED, Krumm A, Lamb J, Nusbaum C, Green RD, Dekker J.Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.Genome Res. 2006 Oct;16(10):1299-309.
    16954542
  • Sällström B, Arnaout RA, Davids W, Bjelkmar P, Andersson SG.Protein evolutionary rates correlate with expression independently of synonymous substitutions in Helicobacter pylori.J Mol Evol. 2006 May;62(5):600-14.
    16586017
  • Arnaout RA.Specificity and overlap in gene segment-defined antibody repertoires.BMC Genomics. 2005;6:148.
    16255770