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Vincent J. Carey, PhD


  • Vázquez Ede L, Carey VJ, Kaye KM.Identification of Kaposi's sarcoma-associated herpesvirus LANA regions important for episome segregation, replication, and persistence.J Virol. 2013 Nov;87(22):12270-83.
  • Shioda T, Rosenthal NF, Coser KR, Suto M, Phatak M, Medvedovic M, Carey VJ, Isselbacher KJ.Expressomal approach for comprehensive analysis and visualization of ligand sensitivities of xenoestrogen responsive genes.Proc Natl Acad Sci U S A. 2013 Oct 8;110(41):16508-13.
  • Lawrence M, Huber W, Pagès H, Aboyoun P, Carlson M, Gentleman R, Morgan MT, Carey VJ.Software for computing and annotating genomic ranges.PLoS Comput. Biol. 2013;9(8):e1003118.
  • Wan ES, Qiu W, Baccarelli A, Carey VJ, Bacherman H, Rennard SI, Agusti A, Anderson W, Lomas DA, Demeo DL.Cigarette smoking behaviors and time since quitting are associated with differential DNA methylation across the human genome.Hum Mol Genet. 2012 Jul 1;21(13):3073-82.
  • Murphy A, Chu JH, Xu M, Carey VJ, Lazarus R, Liu A, Szefler SJ, Strunk R, Demuth K, Castro M, Hansel NN, Diette GB, Vonakis BM, Franklin Adkinson N, Klanderman BJ, Senter-Sylvia J, Ziniti J, Lange C, Pastinen T, Raby BA.Mapping of numerous disease-associated expression polymorphisms in primary peripheral blood CD4+ lymphocytes.Hum Mol Genet. 2010 Dec 1;19(23):4745-57.
  • Kho AT, Bhattacharya S, Tantisira KG, Carey VJ, Gaedigk R, Leeder JS, Kohane IS, Weiss ST, Mariani TJ.Transcriptomic analysis of human lung development.Am J Respir Crit Care Med. 2010 Jan 1;181(1):54-63.
  • Lawrence M, Gentleman R, Carey V.rtracklayer: an R package for interfacing with genome browsers.Bioinformatics. 2009 Jul 15;25(14):1841-2.
  • Chu JH,Weiss ST,Carey VJ,Raby BA.A graphical model approach for inferring large-scale networks integrating gene expression and genetic polymorphism.BMC Syst Biol. 2009 May 27;3(1):55.
  • Carey VJ,Davis AR,Lawrence MF,Gentleman R,Raby BA.Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x.Bioinformatics. 2009 Jun 1;25(11):1447-8.
  • Carey VJ, Gentleman R.Interpreting genetics of gene expression: integrative architecture in Bioconductor.Pac Symp Biocomput. 2009:380-90.
  • Foudi A,Hochedlinger K,Van Buren D,Schindler JW,Jaenisch R,Carey V,Hock H.Analysis of histone 2B-GFP retention reveals slowly cycling hematopoietic stem cells.Nat Biotechnol. 2009 Jan;27(1):84-90.
  • Asare AL,Gao Z,Carey VJ,Wang R,Seyfert-Margolis V.Power enhancement via multivariate outlier testing with gene expression arrays.Bioinformatics. 2009 Jan 1;25(1):48-53.
  • Ben-Porath I, Thomson MW, Carey VJ, Ge R, Bell GW, Regev A, Weinberg RA.An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors.Nat Genet. 2008 May;40(5):499-507.
  • Carey VJ, Gentry J, Sarkar R, Gentleman D, Ramaswamy S.SGDI: system for genomic data integration.Pac Symp Biocomput. 2008:141-52.
  • Tishler PV, Carey VJ.Can comparison of MZ- and DZ-twin concordance rates be used invariably to estimate heritability?.Twin Res Hum Genet. 2007 Oct;10(5):712-7.
  • Tarca AL, Carey VJ, Chen XW, Romero R, Draghici S.Machine learning and its applications to biology.PLoS Comput Biol. 2007 Jun;3(6):e116. Review.
  • Carey VJ, Morgan M, Falcon S, Lazarus R, Gentleman R.GGtools: analysis of genetics of gene expression in bioconductor.Bioinformatics. 2007 Feb 15;23(4):522-3. Review.
  • Reimers M, Carey VJ.Bioconductor: an open source framework for bioinformatics and computational biology.Methods Enzymol. 2006;411:119-34. Review.
  • Bilban M, Heintel D, Scharl T, Woelfel T, Auer MM, Porpaczy E, Kainz B, Krber A, Carey VJ, Shehata M, Zielinski C, Pickl W, Stilgenbauer S, Gaiger A, Wagner O, Jger U,.Deregulated expression of fat and muscle genes in B-cell chronic lymphocytic leukemia with high lipoprotein lipase expression.Leukemia. 2006 Jun;20(6):1080-8.
  • Hufnagel M, Carey VJ, Baldassarri L, Reinert RR, Huebner J.Distribution of four capsular serotypes of Enterococcus faecalis among clinical isolates from different geographical origins and infection sites.Infection. 2006 Feb;34(1):22-5.
  • Carey VJ, Bishop L, Charleston J, Conlin P, Erlinger T, Laranjo N, McCarron P, Miller E, Rosner B, Swain J, Sacks FM, Appel LJ.Rationale and design of the Optimal Macro-Nutrient Intake Heart Trial to Prevent Heart Disease (OMNI-Heart).Clin Trials. 2005;2(6):529-37.
  • Finkelstein JA, Lozano P, Fuhlbrigge AL, Carey VJ, Inui TS, Soumerai SB, Sullivan SD, Wagner EH, Weiss ST, Weiss KB,.Practice-level effects of interventions to improve asthma care in primary care settings: the Pediatric Asthma Care Patient Outcomes Research Team.Health Serv Res. 2005 Dec;40(6 Pt 1):1737-57.
  • Kovacs A, Montepiedra G, Carey V, Pahwa S, Weinberg A, Frenkel L, Capparelli E, Mofenson L, Smith E, McIntosh K, Burchett SK,.Immune reconstitution after receipt of highly active antiretroviral therapy in children with advanced or progressive HIV disease and complete or partial viral load response.J Infect Dis. 2005 Jul 15;192(2):296-302.
  • Orimo A, Gupta PB, Sgroi DC, Arenzana-Seisdedos F, Delaunay T, Naeem R, Carey VJ, Richardson AL, Weinberg RA.Stromal fibroblasts present in invasive human breast carcinomas promote tumor growth and angiogenesis through elevated SDF-1/CXCL12 secretion.Cell. 2005 May 6;121(3):335-48.
  • Carey VJ, Gentry J, Whalen E, Gentleman R.Network structures and algorithms in Bioconductor.Bioinformatics. 2005 Jan 1;21(1):135-6.