Jonghye Woo, PhD
Massachusetts General Hospital
Massachusetts General Hospital
Phone: (617) 643-4846
Jonghye Woo, PhD
Massachusetts General Hospital
EDUCATIONAL TITLES
DF/HCC PROGRAM AFFILIATION
Publications from Harvard Catalyst Profiles
- Li Z, Shi Y, Wang L, Lu J, Liu X, Woo J, Ouyang J, Hu J, Zhou D, Gong W, Yang X, Yu H, Wang Y, Liu F, Dong Y, Ye M, Shi S, Chen X, Qiu M, El Fakhri G, Kong L, Sun X, Zheng Y, Shi Y, Yu H, Liu X. Deep learning-based non-contrast MRI model for nasopharyngeal carcinoma diagnosis: an end-to-end gadolinium-free solution. NPJ Digit Med 2025; 8:786. PubMed
- Wei J, Zhao X, Woo J, Ouyang J, El Fakhri G, Chen Q, Liu X. Mixture-of-Shape-Experts (MoSE): End-to-End Shape Dictionary Framework to Prompt SAM for Generalizable Medical Segmentation. Conf Comput Vis Pattern Recognit Workshops 2025; 2025:6450-6460. PubMed
- Dong Y, Marin T, Zhuo Y, Najem E, Beddok A, Rozenblum L, Moteabbed M, Grogg K, Xing F, Woo J, Chen YE, Lim R, Liu X, Ma C, Fakhri GE. Modeling inter-reader variability in clinical target volume delineation for soft tissue sarcomas using diffusion model. Med Phys 2025. PubMed
- Kim G, Xing F, Kong HJ, Santarnecchi E, Shih HA, Bortfeld T, El Fakhri G, Liu X, Choi JH, Woo J. OVERALL SURVIVAL PREDICTION OF BRAIN TUMOR PATIENTS WITH MULTIMODAL MRI USING SWIN UNETR. Proc IEEE Int Symp Biomed Imaging 2025. PubMed
- Dong Y, Marin T, Zhuo Y, Najem E, Moteabbed M, Xing F, Beddok A, Lahoud RM, Rozenblum L, Ding Z, Liu X, Grogg K, Woo J, Chen YE, Lim R, Ma C, El Fakhri G. Gross tumor volume confidence maps prediction for soft tissue sarcomas from multi-modality medical images using a diffusion model. Phys Imaging Radiat Oncol 2025; 33:100734. PubMed
- Liu X, Xing F, Bian Z, Arias-Vergara T, Pérez-Toro PA, Maier A, Stone M, Zhuo J, Prince JL, Woo J. Tagged-to-Cine MRI Sequence Synthesis via Light Spatial-Temporal Transformer. Med Image Comput Comput Assist Interv 2024; 15007:701-711. PubMed
- Arias-Vergara T, Pérez-Toro PA, Liu X, Xing F, Stone M, Zhuo J, Prince JL, Schuster M, Nöth E, Woo J, Maier A. Contrastive Learning Approach for Assessment of Phonological Precision in Patients with Tongue Cancer Using MRI Data. Interspeech 2024; 2024:927-931. PubMed
- Najem E, Marin T, Zhuo Y, Lahoud RM, Tian F, Beddok A, Rozenblum L, Xing F, Moteabbed M, Lim R, Liu X, Woo J, Lostetter SJ, Lamane A, Chen YE, Ma C, El Fakhri G. The role of F-FDG PET in minimizing variability in gross tumor volume delineation of soft tissue sarcomas. Radiother Oncol 2024; 194:110186. PubMed
- Liu X, Shusharina N, Shih HA, Kuo CJ, El Fakhri G, Woo J. Treatment-wise Glioblastoma Survival Inference with Multi-parametric Preoperative MRI. Proc SPIE Int Soc Opt Eng 2024. PubMed
- Liu X, Prince JL, Xing F, Zhuo J, Reese T, Stone M, El Fakhri G, Woo J. Attentive continuous generative self-training for unsupervised domain adaptive medical image translation. Med Image Anal 2023; 88:102851. PubMed
- Shao M, Xing F, Carass A, Liang X, Zhuo J, Stone M, Woo J, Prince JL. Analysis of Tongue Muscle Strain During Speech From Multimodal Magnetic Resonance Imaging. J. Speech Lang. Hear. Res. 2023; 66:513-526. PubMed
- Kong HJ, Kim JY, Moon HM, Park HC, Kim JW, Lim R, Woo J, Fakhri GE, Kim DW, Kim S. Automation of generative adversarial network-based synthetic data-augmentation for maximizing the diagnostic performance with paranasal imaging. Sci Rep 2022; 12:18118. PubMed
- Liu X, Xing F, El Fakhri G, Woo J. Memory consistent unsupervised off-the-shelf model adaptation for source-relaxed medical image segmentation. Med Image Anal 2022; 83:102641. PubMed
- Liu X, Xing F, Shusharina N, Lim R, Kuo CJ, El Fakhri G, Woo J. ACT: Semi-supervised Domain-adaptive Medical Image Segmentation with Asymmetric Co-Training. Med Image Comput Comput Assist Interv 2022; 13435:66-76. PubMed
- Shusharina N, Liu X, Coll-Font J, Foster A, El Fakhri G, Woo J, Bortfeld T, Nguyen C. Feasibility study of clinical target volume definition for soft-tissue sarcoma using muscle fiber orientations derived from diffusion tensor imaging. Phys Med Biol 2022. PubMed
- Xing F, Liu X, Kuo CJ, Fakhri GE, Woo J. Brain MR Atlas Construction Using Symmetric Deep Neural Inpainting. IEEE J Biomed Health Inform 2022; 26:3185-3196. PubMed
- Liu X, Xing F, Fakhri GE, Woo J. SELF-SEMANTIC CONTOUR ADAPTATION FOR CROSS MODALITY BRAIN TUMOR SEGMENTATION. Proc IEEE Int Symp Biomed Imaging 2022. PubMed
- Marin T, Zhuo Y, Lahoud RM, Tian F, Ma X, Xing F, Moteabbed M, Liu X, Grogg K, Shusharina N, Woo J, Lim R, Ma C, Chen YE, El Fakhri G. Deep learning-based GTV contouring modeling inter- and intra- observer variability in sarcomas. Radiother Oncol 2022; 167:269-276. PubMed
- Liu X, Yoo C, Xing F, Kuo CJ, El Fakhri G, Kang JW, Woo J. Unsupervised Domain Adaptation for Segmentation with Black-box Source Model. Proc SPIE Int Soc Opt Eng 2022. PubMed
- Liu X, Yoo C, Xing F, Kuo CJ, El Fakhri G, Kang JW, Woo J. Unsupervised Black-Box Model Domain Adaptation for Brain Tumor Segmentation. Front Neurosci 2022; 16:837646. PubMed
- Woo J, Xing F, Prince JL, Stone M, Gomez AD, Reese TG, Wedeen VJ, El Fakhri G. A deep joint sparse non-negative matrix factorization framework for identifying the common and subject-specific functional units of tongue motion during speech. Med Image Anal 2021; 72:102131. PubMed
- Liu X, Xing F, Fakhri GE, Woo J. A UNIFIED CONDITIONAL DISENTANGLEMENT FRAMEWORK FOR MULTIMODAL BRAIN MR IMAGE TRANSLATION. Proc IEEE Int Symp Biomed Imaging 2021. PubMed
- Xing F, Stone M, Prince JL, Liu X, Fakhri GE, Woo J. Floor-of-the-Mouth Muscle Function Analysis Using Dynamic Magnetic Resonance Imaging. Proc SPIE Int Soc Opt Eng 2021. PubMed
- Liu X, Xing F, Yang C, Jay Kuo CC, El Fakhri G, Woo J. Symmetric-Constrained Irregular Structure Inpainting for Brain MRI Registration with Tumor Pathology. Brainlesion 2021; 12658:80-91. PubMed
- Liu X, Xing F, Yang C, Fakhri GE, Woo J. Adapting Off-the-Shelf Source Segmenter for Target Medical Image Segmentation. Med Image Comput Comput Assist Interv 2021; 12902:549-559. PubMed
- Xing F, Stone M, Goldsmith T, Prince JL, El Fakhri G, Woo J. Atlas-Based Tongue Muscle Correlation Analysis From Tagged and High-Resolution Magnetic Resonance Imaging. J. Speech Lang. Hear. Res. 2019; 62:2258-2269. PubMed
- Woo J, Xing F, Prince JL, Stone M, Green JR, Goldsmith T, Reese TG, Wedeen VJ, El Fakhri G. Differentiating post-cancer from healthy tongue muscle coordination patterns during speech using deep learning. J Acoust Soc Am 2019; 145:EL423. PubMed